PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004499430.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 93aa    MW: 10627.9 Da    PI: 9.3987
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004499430.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH246.8e-0821611454
                    HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    d+i +  ++L++llP+ + + +s K+s + +L+++++YI+sL
  XP_004499430.1 21 DQIHDLVSKLQQLLPEiR-NRSSDKVSASRVLQETCNYIRSL 61
                    67889999********77.89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.213761IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-82177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-52161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-92179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSSRRSRSRQ TSSSSRNITD DQIHDLVSKL QQLLPEIRNR SSDKVSASRV LQETCNYIRS  60
LHREVDDLSE RLSELLATTD SAQAAIIRNL LMQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1436991e-103BT143699.1 Medicago truncatula clone JCVI-FLMt-4G12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499430.19e-59PREDICTED: transcription factor ILI6
SwissprotF4JCN92e-38PRE4_ARATH; Transcription factor PRE4
TrEMBLI3STA12e-46I3STA1_MEDTR; Transcription factor
STRINGGLYMA04G34080.12e-44(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74500.11e-36activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1